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Pan melanoma & Ki-67 Multiplex IHC

Quantification of proliferating nuclei with multiplexed IHC in between melanoma and melanocytic nevi.
December 31, 2010
by Frank
0 Comment
Genie, histology pattern recognition, image analysis, Ki67, melanocytes, melanocytic lesions, Multiplexed IHC, proliferation, tyrosinase, Visiopharm

Tissue-based proteomics meets digital pathology

New approach combining laser capture micro-dissection with digital pathology and histology pattern recognition
December 29, 2010
by Steve
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amyloidosis, biopsy specimen, digital pathology, epitope, histology pattern recognition, mass spec, mayo clinic, microdissection, multiplexing, post translational modifications, protein expression

Measuring ocular toxicologic changes with pattern recognition

The eye serves as an important organ for toxicology research. Below is a rodent H&E ocular cross-section, followed by pathologist-trained pattern recognition of each layer. This provides a larger and faster region of interest drawing than would be used with manual ROI drawing by a
May 03, 2010
by Frank
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angiogenesis, histology pattern recognition, ophthalmology, vascularization

Directed random sampling in pathology

There are  many times when a pathologist needs to randomly sample tissue in a directed manner.  This is to assure that similar tissue substructures are sampled in a manner that prevents biasing of results.  If the problem was as straightforward as sampling ANY area, then random sampli
January 20, 2010
by Frank
1 Comment
angiogenesis, Aperio, biostatistics, digital pathology, directed random sampling, histology pattern recognition, IHC, image analysis, ImageScope, liver, toxicology

The limits of histology pattern recognition – glomeruli H&Es

Detecting glomeruli is an important first step in a number of image analysis applications in renal health and toxicology. Unfortunately, it is one of the hardest applications for histology pattern recognition. In this post, I will discuss a reallife example of the steps used to do his
January 16, 2010
by dave
2 Comments
area quantification, Genie, histology pattern recognition, image analysis, kidney

Histology pattern recognition — zoom out!

Experienced pathologists are very good at using minimum magnification to look at a slide. A pathologist can see more scanning an entire slide at 5x and then occasionally jumping to 20x or 40x in a couple of areas, than starting out at 40x. We all know this, and take it for granted as
January 15, 2010
by dave
2 Comments
Genie, histology pattern recognition
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